PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 468aa    MW: 51755.8 Da    PI: 7.9832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-11127151327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C++f+rtG Ck+G++Ck++H++
  PEQU_27271 127 QPDCQYFLRTGMCKFGATCKYHHPR 151
                 789********************96 PP

2zf-CCCH39.41e-12173196427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C++++rtGtCk+G  CkF H++
  PEQU_27271 173 KSCSYYMRTGTCKFGVACKFDHPQ 196
                 56********************97 PP

3zf-CCCH38.61.8e-12316341227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C++++rtG CkyG++Ck++H++
  PEQU_27271 316 DQPDCQYYLRTGSCKYGSTCKYHHPK 341
                 6899********************96 PP

4zf-CCCH33.47.8e-11361385226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C+f++ +GtC++G+ C+F H+
  PEQU_27271 361 GHAVCSFYSMYGTCRFGSACRFDHP 385
                 7899********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd016471.83E-331102No hitNo description
SuperFamilySSF566722.67E-26298No hitNo description
Gene3DG3DSA:3.10.10.102.8E-8288No hitNo description
SMARTSM003566.4E-6124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122124152IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8127151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6128153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4130151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6169197IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5171196IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10172196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5174195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.192314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5314341IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6318343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4320340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023359387IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6359386IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-8361385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
IRVCVDFKDL NKVCPKDVFP LSIPELMVDI ASTHEILSLM DGSSGYNQIK MAPKDVALIA  60
FRTSIEIFCY TVMPFGLRND GATYKRAMTN IFDELFDNKM CVHTNHSVIK YLMGTRAKGE  120
LPERVGQPDC QYFLRTGMCK FGATCKYHHP RDRQDARALG FNIFGFPMRQ DEKSCSYYMR  180
TGTCKFGVAC KFDHPQPAPG AVYPLTLTGS PAYRSTISSV APTPSMPFAG GISSWPSANG  240
QPYMSSPRMQ CLPAYVPVII PTTPGTIPGQ QGWSNYTGDV SQVTSPEVVG HTKTPKSKNK  300
AQPSPSYIEN LPERPDQPDC QYYLRTGSCK YGSTCKYHHP KDRISSAIGF LGPLGLPLRP  360
GHAVCSFYSM YGTCRFGSAC RFDHPLISYY NYALPEIYAP DPSSWFSNQS NPQTTLISFD  420
VSPPKVMKSE VTDEALPSDS DEYRNPPAQA TSPPHTALSS ESPLNQSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ol8_A4e-12295114207Reverse transcriptase/ribonuclease H
4ol8_B4e-12295114207Reverse transcriptase/ribonuclease H
4ol8_E4e-12295114207Reverse transcriptase/ribonuclease H
4ol8_F4e-12295114207Reverse transcriptase/ribonuclease H
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394545.11e-121PREDICTED: zinc finger CCCH domain-containing protein 12-like
TrEMBLM0SII71e-120M0SII7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28210_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-55C3H family protein